Fig. 2
From: Bioinformatic exploration of RiPP biosynthetic gene clusters in lichens
Diversity of RiPP biosynthetic gene clusters (BGCs) and distribution of the conserved RiPP BGCs in lichens. (a) Phylogenomic species tree depicting genome completeness (G. completeness; inferred as percentage of complete BUSCO genes present in the genomes), total BGCs and RiPP BGCs identified in each taxon (shown as heatmaps). Blue circles/dots in front of the species name on the tree represent the presence of a BGC belonging to the two conserved RiPP clans. Both RiPP clans were detected in the Parmeliaceae family. (b) BiG-SCAPE network of RiPP BGCs. Most RiPP gene clusters do not cluster into GCFs and are represented by single dots in this RiPP network. Some GCFs cluster together, thus forming larger clusters or clans, marked by the colored circles in the network. Clan R1 and Clan R2 are marked by the circles in light blue and dark blue respectively. (c) Violin plot demonstrating the distribution of unique RiPP BGCs across taxa in the different Lecanoromycete families.