Fig. 3

(A) Upset plot showing the numbers of DEGs shared across all batch 1 isolates (B) Dotplot highlighting significantly enriched biological processes following gene ontology (GO) analysis. (C) Heatmaps of log2FC and FDR of mutated genes. Heatmap of log2 fold change (log2FC) of mutated genes in batch 1 isolates. Letters denote the presence of a SNP and indicate the type of mutation (M = missense, U = upstream, S = synonomous, I = intron). Black boxes highlight significant differentially expressed genes (FDR < 0.05)