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Table 1 Characteristics of proteins identified in Z. tritici EV samples and the soluble secreted fraction

From: Extracellular vesicles from the apoplastic fungal wheat pathogen Zymoseptoria tritici

Proteins identified using LC–MS/MS

EV proteins

Soluble secreted proteins (SS)

Biological replicates

5

3

Total proteins identified

771

99

High confidence (HC) proteins1

240

79

HC proteins unique to sample type2

210 (100%)

49 (100%)

 Proteins with signal peptides

14 (6.7%)

38 (77.6%)

 Proteins with transmembrane domains/GPI-anchors3

15 (7.1%)

1 (2.0%)

 Putative Cazymes

7 (3.3%)

6 (12.2%)

 Putative proteolytic enzymes

6 (2.5%)

3 (6.1%)

 Predicted effectors4

17 (8.1%)

16 (32.7%)

 Median protein size

426 aa

257 aa

  1. 1Proteins were high-confidence if present in ≥ 4/5 EV biological replicates or ≥ 2/3 SS replicates, with ≥ 2 unique peptides detected
  2. 2Protein counts and percentages in the following rows are in reference to the subset of HC proteins detected only in EVs or SS fractions; proteins detected in both fractions were excluded from these counts
  3. 3Transmembrane domains predictions by TMHMM were included when more than one domain predicted, or if only one was predicted, this was not in the first 60 amino acids
  4. 4Effector count includes proteins predicted as effector by both v1.0 and v2.0 of EffectorP
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Fungal Biology and Biotechnology

ISSN: 2054-3085

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